Package: MixSIAR 3.1.12

MixSIAR: Bayesian Mixing Models in R

Creates and runs Bayesian mixing models to analyze biological tracer data (i.e. stable isotopes, fatty acids), which estimate the proportions of source (prey) contributions to a mixture (consumer). 'MixSIAR' is not one model, but a framework that allows a user to create a mixing model based on their data structure and research questions, via options for fixed/ random effects, source data types, priors, and error terms. 'MixSIAR' incorporates several years of advances since 'MixSIR' and 'SIAR'.

Authors:Brian Stock [cre, aut], Brice Semmens [aut], Eric Ward [ctb], Andrew Parnell [ctb], Andrew Jackson [ctb], Donald Phillips [ctb]

MixSIAR_3.1.12.tar.gz
MixSIAR_3.1.12.zip(r-4.5)MixSIAR_3.1.12.zip(r-4.4)MixSIAR_3.1.12.zip(r-4.3)
MixSIAR_3.1.12.tgz(r-4.4-any)MixSIAR_3.1.12.tgz(r-4.3-any)
MixSIAR_3.1.12.tar.gz(r-4.5-noble)MixSIAR_3.1.12.tar.gz(r-4.4-noble)
MixSIAR_3.1.12.tgz(r-4.4-emscripten)MixSIAR_3.1.12.tgz(r-4.3-emscripten)
MixSIAR.pdf |MixSIAR.html✨
MixSIAR/json (API)
NEWS

# Install 'MixSIAR' in R:
install.packages('MixSIAR', repos = c('https://brianstock.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/brianstock/mixsiar/issues

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3

On CRAN:

9.18 score 94 stars 116 scripts 966 downloads 58 mentions 21 exports 73 dependencies

Last updated 4 years agofrom:037978f3de. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 18 2024
R-4.5-winOKNov 18 2024
R-4.5-linuxOKNov 18 2024
R-4.4-winOKNov 18 2024
R-4.4-macOKNov 18 2024
R-4.3-winOKNov 18 2024
R-4.3-macOKNov 18 2024

Exports:calc_areacombine_sourcescompare_modelsload_discr_dataload_mix_dataload_source_dataoutput_diagnosticsoutput_JAGSoutput_pairsoutput_posteriorsoutput_statsoutput_xyplot_continuous_varplot_dataplot_data_one_isoplot_data_two_isoplot_intervalsplot_priorrun_modelsummary_statwrite_JAGS_model

Dependencies:abindbackportsbayesplotbootcheckmateclicodacolorspacecpp11crayondistributionaldplyrfansifarverforcatsgenericsGGallyggmcmcggplot2ggridgesggstatsgluegtablehmsisobandlabelinglatticelifecycleloomagrittrMASSMatrixMatrixModelsmatrixStatsmcmcMCMCpackmgcvmunsellnlmenumDerivpatchworkpillarpkgconfigplyrposteriorprettyunitsprogresspurrrquantregR2jagsR2WinBUGSR6RColorBrewerRcppreshapereshape2rjagsrlangscalesspSparseMsplancsstringistringrsurvivaltensorAtibbletidyrtidyselectutf8vctrsviridisLitewithr

Ex 1: Wolves

Rendered fromwolves_ex.Rmdusingknitr::rmarkdownon Nov 18 2024.

Last update: 2020-10-16
Started: 2016-03-07

Ex 2: Geese

Rendered fromgeese_ex.Rmdusingknitr::rmarkdownon Nov 18 2024.

Last update: 2020-10-16
Started: 2016-03-11

Ex 3: Lake

Rendered fromlake_ex.Rmdusingknitr::rmarkdownon Nov 18 2024.

Last update: 2020-10-16
Started: 2016-03-11

Ex 4: Killer Whale

Rendered fromkillerwhale_ex.Rmdusingknitr::rmarkdownon Nov 18 2024.

Last update: 2020-10-16
Started: 2016-03-11

Ex 5: Isopod

Rendered fromisopod_ex.Rmdusingknitr::rmarkdownon Nov 18 2024.

Last update: 2020-10-16
Started: 2016-03-11

Ex 6: Cladocera

Rendered fromcladocera_ex.Rmdusingknitr::rmarkdownon Nov 18 2024.

Last update: 2020-10-16
Started: 2016-03-11

Modifying MixSIAR plots

Rendered frommodify_output.Rmdusingknitr::rmarkdownon Nov 18 2024.

Last update: 2020-10-20
Started: 2020-10-19